





Favor Markdown, plain text, JSON, OPML, CSV, and PDF/A for long‑term stability. These formats are readable without special subscriptions and have many mature tools. Even when a proprietary app helps you think, insist on high‑quality exports you can parse, transform, and maintain as your needs evolve over time.
Your archive is more than files; it is relationships between ideas. Maintain stable identifiers, bidirectional links, citation fields, and creation dates. When exporting, include attachments, image alt text, and highlight anchors. This extra effort ensures your research graph remains navigable instead of dissolving into disconnected, context‑stripped fragments.
Prefer pipelines you can run forward and backward: import cleanly, export cleanly, and reconcile differences deterministically. Keep transformation scripts version‑controlled. When I migrated from a legacy notes app, a reversible workflow let me test multiple mappings safely, then switch without regret once everything rendered beautifully in the new home.